Hi Max,
All I can say for certain is this, you have the advantage of this forum with all of the members and builders helping out with problems.
When I built Harvey's car it wasn't available, so I had to 'Fly Blind' as it were, when I used a Scooter transaxle. Not even Richard had seen one, so he couldn't help much.
There are no 'Hard and Fast' rules when adapting a scooter system. The only thing I can see from the photo, is how do you plan to tension the chain to the drive wheels?
Although this is a minor hiccup, and not impossible to solve, it could come back to bite you in the future, if you don't plan for it now.
You might find that Mini-Moto disks won't fit into the space you have at the front of the wheel well, where the axle exits, so get measurements / sizes first, before you commit to cash!
I would try and clear your head of all un-necessary modifications, and concentrate on the basic build for the time being. Otherwise I can see you running into major headaches in the future, I know.
I layed out Harvey's car the same as you (there's a picture in the T2 section of the gallery), following the scooters original format, but I didn't gain any space in the rear tub area, but I can slide the transaxle back and forth to tension the chains.
One thing I could suggest, if you want more space in the rear of the car (and we're only talking a few inches here), is mount the motor above the axle, rather than behind.
Walter has done this (to great effect), the drawback is, the floor below the transaxle has to be modified (for clearance), and the seat raised slightly to clear.
Following this modification, the car will have more space in the rear tub, but a step behind the seat base.
It's a matter of 'Horses for Courses' I'm afraid, but try the K.I.S.S. approach (Keep It Simple Sunshine), and you won't go far wrong.
Hope this has helped,
Best Regards,
Mark.
P.S. If you click on the 'Globe' icon below my user-name (top left), it will take you to my build website. Have a read through this, and you will see some of the problems I had with the conversion.